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AuthorTitleYearJournal/ProceedingsReftypeDOI/URL
Front Matter 2016
Vol. 28Ecological Model Types, pp. iii 
incollection DOI URL 
BibTeX:
@incollection{Joergensen2016,,
  title = {Front Matter},
  booktitle = {Ecological Model Types},
  publisher = {Elsevier},
  year = {2016},
  volume = {28},
  pages = {iii},
  url = {http://www.sciencedirect.com/science/article/pii/B9780444636232210013},
  doi = {https://doi.org/10.1016/B978-0-444-63623-2.21001-3}
}
List of Contributors 2016
Vol. 28Ecological Model Types, pp. vii 
incollection DOI URL 
BibTeX:
@incollection{Joergensen2016a,,
  title = {List of Contributors},
  booktitle = {Ecological Model Types},
  publisher = {Elsevier},
  year = {2016},
  volume = {28},
  pages = {vii},
  url = {http://www.sciencedirect.com/science/article/pii/B9780444636232210025},
  doi = {https://doi.org/10.1016/B978-0-444-63623-2.21002-5}
}
Jørgensen, S. Chapter 6 - Application of Structurally Dynamic Models (SDMs) 2016
Vol. 28Ecological Model Types, pp. 103 - 122 
incollection DOI URL 
BibTeX:
@incollection{Joergensen2016b,
  author = {S.E. Jørgensen},
  title = {Chapter 6 - Application of Structurally Dynamic Models (SDMs)},
  booktitle = {Ecological Model Types},
  publisher = {Elsevier},
  year = {2016},
  volume = {28},
  pages = {103 - 122},
  url = {http://www.sciencedirect.com/science/article/pii/B9780444636232000062},
  doi = {https://doi.org/10.1016/B978-0-444-63623-2.00006-2}
}
Jørgensen, S. Chapter 8 - Ecotoxicological Models 2016
Vol. 28Ecological Model Types, pp. 141 - 179 
incollection DOI URL 
BibTeX:
@incollection{Joergensen2016c,
  author = {S.E. Jørgensen},
  title = {Chapter 8 - Ecotoxicological Models},
  booktitle = {Ecological Model Types},
  publisher = {Elsevier},
  year = {2016},
  volume = {28},
  pages = {141 - 179},
  url = {http://www.sciencedirect.com/science/article/pii/B9780444636232000086},
  doi = {https://doi.org/10.1016/B978-0-444-63623-2.00008-6}
}
Jørgensen, S. Chapter 2 - Biogeochemical Models 2016
Vol. 28Ecological Model Types, pp. 13 - 38 
incollection DOI URL 
BibTeX:
@incollection{Joergensen2016d,
  author = {S.E. Jørgensen},
  title = {Chapter 2 - Biogeochemical Models},
  booktitle = {Ecological Model Types},
  publisher = {Elsevier},
  year = {2016},
  volume = {28},
  pages = {13 - 38},
  url = {http://www.sciencedirect.com/science/article/pii/B9780444636232000025},
  doi = {https://doi.org/10.1016/B978-0-444-63623-2.00002-5}
}
Jørgensen, S. Chapter 1 - Introduction: An Overview 2016
Vol. 28Ecological Model Types, pp. 1 - 11 
incollection DOI URL 
BibTeX:
@incollection{Joergensen2016e,
  author = {S.E. Jørgensen},
  title = {Chapter 1 - Introduction: An Overview},
  booktitle = {Ecological Model Types},
  publisher = {Elsevier},
  year = {2016},
  volume = {28},
  pages = {1 - 11},
  url = {http://www.sciencedirect.com/science/article/pii/B9780444636232000013},
  doi = {https://doi.org/10.1016/B978-0-444-63623-2.00001-3}
}
Copyright 2016
Vol. 28Ecological Model Types, pp. iv 
incollection DOI URL 
BibTeX:
@incollection{Joergensen2016f,,
  title = {Copyright},
  booktitle = {Ecological Model Types},
  publisher = {Elsevier},
  year = {2016},
  volume = {28},
  pages = {iv},
  url = {http://www.sciencedirect.com/science/article/pii/B9780444636232120018},
  doi = {https://doi.org/10.1016/B978-0-444-63623-2.12001-8}
}
Index 2016
Vol. 28Ecological Model Types, pp. 261 - 268 
incollection DOI URL 
BibTeX:
@incollection{Joergensen2016g,,
  title = {Index},
  booktitle = {Ecological Model Types},
  publisher = {Elsevier},
  year = {2016},
  volume = {28},
  pages = {261 - 268},
  url = {http://www.sciencedirect.com/science/article/pii/B9780444636232200017},
  doi = {https://doi.org/10.1016/B978-0-444-63623-2.20001-7}
}
Justic, D., Duke-Sylvester, S., Visser, J., Xue, Z. and Liang, J. Chapter 11 - Coastal Ecosystem Modeling in the Context of Climate Change: An Overview With Case Studies 2016
Vol. 28Ecological Model Types, pp. 227 - 260 
incollection DOI URL 
BibTeX:
@incollection{Justic2016,
  author = {D. Justic and S.M. Duke-Sylvester and J.M. Visser and Z. Xue and J. Liang},
  title = {Chapter 11 - Coastal Ecosystem Modeling in the Context of Climate Change: An Overview With Case Studies},
  booktitle = {Ecological Model Types},
  publisher = {Elsevier},
  year = {2016},
  volume = {28},
  pages = {227 - 260},
  url = {http://www.sciencedirect.com/science/article/pii/B9780444636232000116},
  doi = {https://doi.org/10.1016/B978-0-444-63623-2.00011-6}
}
Kelleher, L.S. Acknowledgements 2016
Vol. 28Ecological Model Types, pp. ix 
incollection DOI URL 
BibTeX:
@incollection{Kelleher2016,
  author = {Laura Spence Kelleher},
  title = {Acknowledgements},
  booktitle = {Ecological Model Types},
  publisher = {Elsevier},
  year = {2016},
  volume = {28},
  pages = {ix},
  url = {http://www.sciencedirect.com/science/article/pii/B9780444636232210049},
  doi = {https://doi.org/10.1016/B978-0-444-63623-2.21004-9}
}
Kong, X.-Z., Xu, F.-L., He, W., Liu, W.-X. and Yang, B. Steady State Models 2016 Developments in Environmental Modelling, pp. 65-89  incollection DOI  
BibTeX:
@incollection{Kong2016,
  author = {X.-Z. Kong and F.-L. Xu and W. He and W.-X. Liu and B. Yang},
  title = {Steady State Models},
  booktitle = {Developments in Environmental Modelling},
  publisher = {Elsevier},
  year = {2016},
  pages = {65--89},
  doi = {https://doi.org/10.1016/b978-0-444-63623-2.00004-9}
}
Kong, X.-Z., Xu, F.-L., He, W., Liu, W.-X. and Yang, B. Chapter 4 - Steady State Models 2016
Vol. 28Ecological Model Types, pp. 65 - 89 
incollection DOI URL 
BibTeX:
@incollection{Kong2016a,
  author = {X.-Z. Kong and F.-L. Xu and W. He and W.-X. Liu and B. Yang},
  title = {Chapter 4 - Steady State Models},
  booktitle = {Ecological Model Types},
  publisher = {Elsevier},
  year = {2016},
  volume = {28},
  pages = {65 - 89},
  url = {http://www.sciencedirect.com/science/article/pii/B9780444636232000049},
  doi = {https://doi.org/10.1016/B978-0-444-63623-2.00004-9}
}
Kong, X.-Z., Xu, F.-L., He, W., Liu, W.-X. and Yang, B. Chapter 9 - Fugacity Models 2016
Vol. 28Ecological Model Types, pp. 181 - 210 
incollection DOI URL 
BibTeX:
@incollection{Kong2016b,
  author = {X.-Z. Kong and F.-L. Xu and W. He and W.-X. Liu and B. Yang},
  title = {Chapter 9 - Fugacity Models},
  booktitle = {Ecological Model Types},
  publisher = {Elsevier},
  year = {2016},
  volume = {28},
  pages = {181 - 210},
  url = {http://www.sciencedirect.com/science/article/pii/B9780444636232000098},
  doi = {https://doi.org/10.1016/B978-0-444-63623-2.00009-8}
}
Legović, T. Chapter 3 - Dynamic Population Models 2016
Vol. 28Ecological Model Types, pp. 39 - 63 
incollection DOI URL 
BibTeX:
@incollection{Legovic2016,
  author = {T. Legović},
  title = {Chapter 3 - Dynamic Population Models},
  booktitle = {Ecological Model Types},
  publisher = {Elsevier},
  year = {2016},
  volume = {28},
  pages = {39 - 63},
  url = {http://www.sciencedirect.com/science/article/pii/B9780444636232000037},
  doi = {https://doi.org/10.1016/B978-0-444-63623-2.00003-7}
}
Park, Y.-S. and Lek, S. Chapter 7 - Artificial Neural Networks: Multilayer Perceptron for Ecological Modeling 2016
Vol. 28Ecological Model Types, pp. 123 - 140 
incollection DOI URL 
BibTeX:
@incollection{Park2016,
  author = {Y.-S. Park and S. Lek},
  title = {Chapter 7 - Artificial Neural Networks: Multilayer Perceptron for Ecological Modeling},
  booktitle = {Ecological Model Types},
  publisher = {Elsevier},
  year = {2016},
  volume = {28},
  pages = {123 - 140},
  url = {http://www.sciencedirect.com/science/article/pii/B9780444636232000074},
  doi = {https://doi.org/10.1016/B978-0-444-63623-2.00007-4}
}
Prato, T. Chapter 10 - Fuzzy Adaptive Management of Coupled Natural and Human Systems 2016
Vol. 28Ecological Model Types, pp. 211 - 225 
incollection DOI URL 
BibTeX:
@incollection{Prato2016,
  author = {T. Prato},
  title = {Chapter 10 - Fuzzy Adaptive Management of Coupled Natural and Human Systems},
  booktitle = {Ecological Model Types},
  publisher = {Elsevier},
  year = {2016},
  volume = {28},
  pages = {211 - 225},
  url = {http://www.sciencedirect.com/science/article/pii/B9780444636232000104},
  doi = {https://doi.org/10.1016/B978-0-444-63623-2.00010-4}
}
Yue, T., Zhao, N. and Du, Z. Chapter 5 - Earth's Surface Modeling 2016
Vol. 28Ecological Model Types, pp. 91 - 101 
incollection DOI URL 
BibTeX:
@incollection{Yue2016,
  author = {T.X. Yue and N. Zhao and Z.P. Du},
  title = {Chapter 5 - Earth's Surface Modeling},
  booktitle = {Ecological Model Types},
  publisher = {Elsevier},
  year = {2016},
  volume = {28},
  pages = {91 - 101},
  url = {http://www.sciencedirect.com/science/article/pii/B9780444636232000050},
  doi = {https://doi.org/10.1016/B978-0-444-63623-2.00005-0}
}
Bolker, B. Ecological Models and Data in R 2007   book  
BibTeX:
@book{Bolker2007,
  author = {Ben Bolker},
  title = {Ecological Models and Data in R},
  publisher = {PRINCETON UNIVERSITY PRESS},
  year = {2007}
}
Borcard, D., Gillet, F. and Legendre, P. Numerical Ecology with R 2011   book URL 
BibTeX:
@book{Borcard2011,
  author = {Daniel Borcard and François Gillet and Pierre Legendre},
  title = {Numerical Ecology with R},
  publisher = {Springer},
  year = {2011},
  url = {http://adn.biol.umontreal.ca/ numericalecology/numecolR/}
}
Grant, W.E. and Swannack, T.M. Ecological Modeling: A Common-Sense Approach to Theory and Practice 2008   book  
BibTeX:
@book{Grant2008,
  author = {William E. Grant and Todd M. Swannack},
  title = {Ecological Modeling: A Common-Sense Approach to Theory and Practice},
  publisher = {Blackwell Publishing},
  year = {2008}
}
Kerns, G.J. Introduction to Probability and Statistics Using R 2018   book  
BibTeX:
@book{Kerns2018,
  author = {G. Jay Kerns},
  title = {Introduction to Probability and Statistics Using R},
  year = {2018}
}
Matthiopoulos, J. How to be a Quantitative Ecologist: The 'A to R' of Green Mathematics and Statistics 2011   book  
BibTeX:
@book{Matthiopoulos2011,
  author = {Jason Matthiopoulos},
  title = {How to be a Quantitative Ecologist: The 'A to R' of Green Mathematics and Statistics},
  publisher = {Wiley},
  year = {2011}
}
Zuur, A.F., Ieno, E.N. and Smith, G.M. Analyzing Ecological Data 2007   book  
BibTeX:
@book{Zuur2007,
  author = {Alain F. Zuur and Elena N. Ieno and Graham M. Smith},
  title = {Analyzing Ecological Data},
  publisher = {Springer},
  year = {2007}
}
Zuur, A.F., Ieno, E.N. and Meesters, E.H. A Beginner’s Guide to R 2009   book  
BibTeX:
@book{Zuur2009a,
  author = {Alain F. Zuur and Elena N. Ieno and Erik H.W.G. Meesters},
  title = {A Beginner’s Guide to R},
  publisher = {Springer},
  year = {2009}
}
Zuur, A.F., Ieno, E.N., Walker, N., Saveliev, A.A. and Smith, G.M. Mixed Effects Models And Extensions In Ecology With R 2009   book  
BibTeX:
@book{Zuur2009b,
  author = {Alain F. Zuur and Elena N. Ieno and Neil Walker and Anatoly A. Saveliev and Graham M. Smith},
  title = {Mixed Effects Models And Extensions In Ecology With R},
  publisher = {Springer},
  year = {2009}
}
Joop, F., Reuter, H. and Breckling, B. Modelling complex ecological dynamics: an introduction into ecological modelling for students, teachers and scientists 2011   book  
BibTeX:
@book{,
  author = {Joop, F. and Reuter, H. and Breckling, B.},
  title = {Modelling complex ecological dynamics: an introduction into ecological modelling for students, teachers and scientists},
  publisher = {Springer},
  year = {2011}
}
Jorgensen, S.E. and Fath, B.D. Fundamentals of Ecological Modelling, Applications in Environmental Management and Research. 4th edition. . 2011   book  
BibTeX:
@book{,
  author = {Jorgensen, S. E. and Fath, B. D.},
  title = {Fundamentals of Ecological Modelling, Applications in Environmental Management and Research. 4th edition. .},
  publisher = {Elsevier},
  year = {2011}
}
Hillborn, R. and Mangel, M. The Ecological Detective: Confronting Models with data 1997   book  
BibTeX:
@book{,
  author = {Hillborn, R. and Mangel, M.},
  title = {The Ecological Detective: Confronting Models with data},
  publisher = {Princetown Uiversity Press},
  year = {1997}
}
Soetaert, K. and Herman, P.M.J. A Practical Guide to Ecological Modelling: using R as a Simulation Platform 2008   book  
BibTeX:
@book{,
  author = {Soetaert, K. and Herman, P. M. J.},
  title = {A Practical Guide to Ecological Modelling: using R as a Simulation Platform},
  publisher = {Springer},
  year = {2008}
}
Prelim (ii oriii) Title Page 2016 Ecological Modelling
Vol. 331, pp. iii 
article DOI URL 
BibTeX:
@article{2016,,
  title = {Prelim (ii oriii) Title Page},
  journal = {Ecological Modelling},
  year = {2016},
  volume = {331},
  pages = {iii},
  note = {Ecopath 30 years – Modelling ecosystem dynamics: beyond boundaries with EwE},
  url = {http://www.sciencedirect.com/science/article/pii/S0304380016301260},
  doi = {https://doi.org/10.1016/S0304-3800(16)30126-0}
}
Aars, J., Marques, T.A., Buckland, S.T., Andersen, M., Belikov, S., Boltunov, A. and Wiig, Ø. Estimating the Barents Sea polar bear subpopulation size 2009 Marine Mammal Science
Vol. 25, pp. 35-52 
article  
BibTeX:
@article{Aars2008,
  author = {J. Aars and T. A. Marques and S. T. Buckland and M. Andersen and S. Belikov and A. Boltunov and Ø. Wiig},
  title = {Estimating the Barents Sea polar bear subpopulation size},
  journal = {Marine Mammal Science},
  year = {2009},
  volume = {25},
  pages = {35--52}
}
Aho, K., Derryberry, D. and Peterson, T. Model selection for ecologists: the worldviews of AIC and BIC 2014 Ecology
Vol. 95(3)Ecology, pp. 631-636 
article DOI URL 
BibTeX:
@article{Aho2014,
  author = {Aho, Ken and Derryberry, DeWayne and Peterson, Teri},
  title = {Model selection for ecologists: the worldviews of AIC and BIC},
  booktitle = {Ecology},
  journal = {Ecology},
  publisher = {Ecological Society of America},
  year = {2014},
  volume = {95},
  number = {3},
  pages = {631--636},
  url = {http://dx.doi.org/10.1890/13-1452.1},
  doi = {https://doi.org/10.1890/13-1452.1}
}
Ainsworth, C. and Walters, C. Ten common mistakes made in Ecopath with Ecosim modelling 2015 Ecological Modelling
Vol. 308, pp. 14-17 
article DOI  
BibTeX:
@article{Ainsworth2015,
  author = {C.H. Ainsworth and C.J. Walters},
  title = {Ten common mistakes made in Ecopath with Ecosim modelling},
  journal = {Ecological Modelling},
  publisher = {Elsevier BV},
  year = {2015},
  volume = {308},
  pages = {14--17},
  doi = {https://doi.org/10.1016/j.ecolmodel.2015.03.019}
}
Alexander, K.A., Meyjes, S.A. and Heymans, J.J. Spatial ecosystem modelling of marine renewable energy installations: Gauging the utility of Ecospace 2016 Ecological Modelling
Vol. 331, pp. 115 - 128 
article DOI URL 
BibTeX:
@article{Alexander2016,
  author = {Karen A. Alexander and Sophie A. Meyjes and Johanna J. Heymans},
  title = {Spatial ecosystem modelling of marine renewable energy installations: Gauging the utility of Ecospace},
  journal = {Ecological Modelling},
  year = {2016},
  volume = {331},
  pages = {115 - 128},
  note = {Ecopath 30 years – Modelling ecosystem dynamics: beyond boundaries with EwE},
  url = {http://www.sciencedirect.com/science/article/pii/S0304380016300047},
  doi = {https://doi.org/10.1016/j.ecolmodel.2016.01.016}
}
Anderson, D.R. The need to get the basics right in wildlife field studies 2001 Wildlife Society Bulletin
Vol. 29, pp. 1294-1297 
article URL 
BibTeX:
@article{AND2001,
  author = {Anderson, D. R.},
  title = {The need to get the basics right in wildlife field studies},
  journal = {Wildlife Society Bulletin},
  year = {2001},
  volume = {29},
  pages = {1294--1297},
  url = {http://welcome.warnercnr.colostate.edu/ anderson/PDF_files/Opinion.pdf}
}
Anderson, D.R., Burnham, K.P. and Thompson, W.L. Null hypothesis testing: problems, prevalence, and an alternative 2000 Journal of Wildlife Management
Vol. 64, pp. 912-923 
article  
BibTeX:
@article{Anderson2000,
  author = {Anderson, D. R. and K. P. Burnham and W. L. Thompson},
  title = {Null hypothesis testing: problems, prevalence, and an alternative},
  journal = {Journal of Wildlife Management},
  year = {2000},
  volume = {64},
  pages = {912--923}
}
Anderson, D.R. and Pospahala, R.S. Correction of bias in belt transect studies of immotile objects 1970 Journal of Wildlife Management
Vol. 34, pp. 141-146 
article  
BibTeX:
@article{AndPos70,
  author = {Anderson, D. R. and Pospahala, R. S.},
  title = {Correction of bias in belt transect studies of immotile objects},
  journal = {Journal of Wildlife Management},
  year = {1970},
  volume = {34},
  pages = {141--146}
}
Bacalso, R.T.M., Wolff, M., Rosales, R.M. and Armada, N.B. Effort reallocation of illegal fishing operations: A profitable scenario for the municipal fisheries of Danajon Bank, Central Philippines 2016 Ecological Modelling
Vol. 331, pp. 5 - 16 
article DOI URL 
BibTeX:
@article{Bacalso2016,
  author = {Regina Therese M. Bacalso and Matthias Wolff and Rina Maria Rosales and Nygiel B. Armada},
  title = {Effort reallocation of illegal fishing operations: A profitable scenario for the municipal fisheries of Danajon Bank, Central Philippines},
  journal = {Ecological Modelling},
  year = {2016},
  volume = {331},
  pages = {5 - 16},
  note = {Ecopath 30 years – Modelling ecosystem dynamics: beyond boundaries with EwE},
  url = {http://www.sciencedirect.com/science/article/pii/S0304380016300035},
  doi = {https://doi.org/10.1016/j.ecolmodel.2016.01.015}
}
Boyd, I.L. The Art of Ecological Modeling 2012 Science
Vol. 337(6092), pp. 306-307 
article DOI  
BibTeX:
@article{Boyd2012,
  author = {I. L. Boyd},
  title = {The Art of Ecological Modeling},
  journal = {Science},
  publisher = {American Association for the Advancement of Science (AAAS)},
  year = {2012},
  volume = {337},
  number = {6092},
  pages = {306--307},
  doi = {https://doi.org/10.1126/science.1225049}
}
Coll, M., Steenbeek, J., Sole, J., Palomera, I. and Christensen, V. Modelling the cumulative spatial–temporal effects of environmental drivers and fishing in a NW Mediterranean marine ecosystem 2016 Ecological Modelling
Vol. 331, pp. 100 - 114 
article DOI URL 
BibTeX:
@article{Coll2016,
  author = {Marta Coll and Jeroen Steenbeek and Jordi Sole and Isabel Palomera and Villy Christensen},
  title = {Modelling the cumulative spatial–temporal effects of environmental drivers and fishing in a NW Mediterranean marine ecosystem},
  journal = {Ecological Modelling},
  year = {2016},
  volume = {331},
  pages = {100 - 114},
  note = {Ecopath 30 years – Modelling ecosystem dynamics: beyond boundaries with EwE},
  url = {http://www.sciencedirect.com/science/article/pii/S030438001630093X},
  doi = {https://doi.org/10.1016/j.ecolmodel.2016.03.020}
}
Evans, M.R. Modelling ecological systems in a changing world 2011 Philosophical Transactions of the Royal Society B: Biological Sciences
Vol. 367(1586), pp. 181-190 
article DOI  
BibTeX:
@article{Evans2011,
  author = {M. R. Evans},
  title = {Modelling ecological systems in a changing world},
  journal = {Philosophical Transactions of the Royal Society B: Biological Sciences},
  publisher = {The Royal Society},
  year = {2011},
  volume = {367},
  number = {1586},
  pages = {181--190},
  doi = {https://doi.org/10.1098/rstb.2011.0172}
}
Filipe, A.F., Marques, T.A., Seabra, S., Tiago, P., Ribeiro, F., Moreira Da Costa, L., Cowx, I. and Collares-Pereira, M. Selection of priority areas for fish conservation in the Guadiana River Basin, Iberian Peninsula 2004 Conservation Biology
Vol. 18, pp. 189-200 
article DOI  
BibTeX:
@article{Filipe2004,
  author = {Filipe, A. F. and Marques, T. A. and Seabra, S. and Tiago, P. and Ribeiro, F. and Moreira Da Costa, L. and Cowx, I. and Collares-Pereira, M.},
  title = {Selection of priority areas for fish conservation in the Guadiana River Basin, Iberian Peninsula},
  journal = {Conservation Biology},
  year = {2004},
  volume = {18},
  pages = {189--200},
  doi = {https://doi.org/10.1111/j.1523-1739.2004.00620.x}
}
Fretzer, S. Using the Ecopath approach for environmental impact assessment—A case study analysis 2016 Ecological Modelling
Vol. 331, pp. 160 - 172 
article DOI URL 
BibTeX:
@article{Fretzer2016,
  author = {Sarah Fretzer},
  title = {Using the Ecopath approach for environmental impact assessment—A case study analysis},
  journal = {Ecological Modelling},
  year = {2016},
  volume = {331},
  pages = {160 - 172},
  note = {Ecopath 30 years – Modelling ecosystem dynamics: beyond boundaries with EwE},
  url = {http://www.sciencedirect.com/science/article/pii/S0304380015004536},
  doi = {https://doi.org/10.1016/j.ecolmodel.2015.09.022}
}
Heymans, J.J., Coll, M., Link, J.S., Mackinson, S., Steenbeek, J., Walters, C. and Christensen, V. Best practice in Ecopath with Ecosim food-web models for ecosystem-based management 2016 Ecological Modelling
Vol. 331, pp. 173-184 
article DOI  
BibTeX:
@article{Heymans2016,
  author = {Johanna Jacomina Heymans and Marta Coll and Jason S. Link and Steven Mackinson and Jeroen Steenbeek and Carl Walters and Villy Christensen},
  title = {Best practice in Ecopath with Ecosim food-web models for ecosystem-based management},
  journal = {Ecological Modelling},
  publisher = {Elsevier BV},
  year = {2016},
  volume = {331},
  pages = {173--184},
  doi = {https://doi.org/10.1016/j.ecolmodel.2015.12.007}
}
Heymans, J.J. and Tomczak, M.T. Regime shifts in the Northern Benguela ecosystem: Challenges for management 2016 Ecological Modelling
Vol. 331, pp. 151 - 159 
article DOI URL 
BibTeX:
@article{Heymans2016a,
  author = {Johanna J. Heymans and Maciej T. Tomczak},
  title = {Regime shifts in the Northern Benguela ecosystem: Challenges for management},
  journal = {Ecological Modelling},
  year = {2016},
  volume = {331},
  pages = {151 - 159},
  note = {Ecopath 30 years – Modelling ecosystem dynamics: beyond boundaries with EwE},
  url = {http://www.sciencedirect.com/science/article/pii/S0304380015005128},
  doi = {https://doi.org/10.1016/j.ecolmodel.2015.10.027}
}
Ver Hoef, J.M. and Boveng, P.L. Quasi-poisson vs. negative binomial regression: how should we model overdispersed count data? 2007 Ecology
Vol. 88, pp. 2766-2772 
article  
BibTeX:
@article{Hoef2007,
  author = {Ver Hoef, Jay M. and Peter L. Boveng},
  title = {Quasi-poisson vs. negative binomial regression: how should we model overdispersed count data?},
  journal = {Ecology},
  year = {2007},
  volume = {88},
  pages = {2766--2772}
}
Izquierdo-Gomez, D., Bayle-Sempere, J.T., Arreguín-Sánchez, F. and Sánchez-Jerez, P. Modeling population dynamics and small-scale fisheries yields of fish farming escapes in Mediterranean coastal areas 2016 Ecological Modelling
Vol. 331, pp. 56 - 67 
article DOI URL 
BibTeX:
@article{Izquierdo-Gomez2016,
  author = {David Izquierdo-Gomez and Just T. Bayle-Sempere and Francisco Arreguín-Sánchez and Pablo Sánchez-Jerez},
  title = {Modeling population dynamics and small-scale fisheries yields of fish farming escapes in Mediterranean coastal areas},
  journal = {Ecological Modelling},
  year = {2016},
  volume = {331},
  pages = {56 - 67},
  note = {Ecopath 30 years – Modelling ecosystem dynamics: beyond boundaries with EwE},
  url = {http://www.sciencedirect.com/science/article/pii/S0304380016000314},
  doi = {https://doi.org/10.1016/j.ecolmodel.2016.01.012}
}
Joober, R., Schmitz, N., Annable, L. and Boksa, P. Publication bias: What are the challenges and can they be overcome? 2012 Journal of Psychiatry & Neuroscience
Vol. 37(3), pp. 149-152 
article DOI  
BibTeX:
@article{Joober2012,
  author = {Ridha Joober and Norbert Schmitz and Lawrence Annable and Patricia Boksa},
  title = {Publication bias: What are the challenges and can they be overcome?},
  journal = {Journal of Psychiatry & Neuroscience},
  publisher = {Joule Inc.},
  year = {2012},
  volume = {37},
  number = {3},
  pages = {149--152},
  doi = {https://doi.org/10.1503/jpn.120065}
}
Kluger, L.C., Taylor, M.H., Mendo, J., Tam, J. and Wolff, M. Carrying capacity simulations as a tool for ecosystem-based management of a scallop aquaculture system 2016 Ecological Modelling
Vol. 331, pp. 44 - 55 
article DOI URL 
BibTeX:
@article{Kluger2016,
  author = {Lotta C. Kluger and Marc H. Taylor and Jaime Mendo and Jorge Tam and Matthias Wolff},
  title = {Carrying capacity simulations as a tool for ecosystem-based management of a scallop aquaculture system},
  journal = {Ecological Modelling},
  year = {2016},
  volume = {331},
  pages = {44 - 55},
  note = {Ecopath 30 years – Modelling ecosystem dynamics: beyond boundaries with EwE},
  url = {http://www.sciencedirect.com/science/article/pii/S0304380015003919},
  doi = {https://doi.org/10.1016/j.ecolmodel.2015.09.002}
}
Kumar, R., Varkey, D. and Pitcher, T. Simulation of zebra mussels (Dreissena polymorpha) invasion and evaluation of impacts on Mille Lacs Lake, Minnesota: An ecosystem model 2016 Ecological Modelling
Vol. 331, pp. 68 - 76 
article DOI URL 
BibTeX:
@article{Kumar2016,
  author = {Rajeev Kumar and Divya Varkey and Tony Pitcher},
  title = {Simulation of zebra mussels (Dreissena polymorpha) invasion and evaluation of impacts on Mille Lacs Lake, Minnesota: An ecosystem model},
  journal = {Ecological Modelling},
  year = {2016},
  volume = {331},
  pages = {68 - 76},
  note = {Ecopath 30 years – Modelling ecosystem dynamics: beyond boundaries with EwE},
  url = {http://www.sciencedirect.com/science/article/pii/S0304380016300072},
  doi = {https://doi.org/10.1016/j.ecolmodel.2016.01.019}
}
Lahoz-Monfort, J.J., Guillera-Arroita, G. and Wintle, B.A. Imperfect detection impacts the performance of species distribution models 2014 Global Ecology and Biogeography
Vol. 23, pp. 505-515 
article  
Abstract: Usado na aula 6 de Ecologia numérica, na secção goodies. This relates to the filters (present in sampling) that we have to undo when observing Nature (hence it recalls also slides from 1st lecture).
BibTeX:
@article{Lahoz-Monfort,
  author = {Lahoz-Monfort, J. J. and Guillera-Arroita, G. and Wintle, B. A.},
  title = {Imperfect detection impacts the performance of species distribution models},
  journal = {Global Ecology and Biogeography},
  year = {2014},
  volume = {23},
  pages = {505-515}
}
Langrock, R., Marques, T.A., Thomas, L. and Baird, R.W. Modeling the diving behavior of whales: a latent-variable approach with feedback and semi-Markovian components 2014 Journal of Agricultural, Biological, and Environmental Statistics
Vol. 19, pp. 82-100 
article DOI  
BibTeX:
@article{Langrocksubmitteda,
  author = {Langrock, R. and Marques, T. A. and Thomas, L. and Baird, R. W.},
  title = {Modeling the diving behavior of whales: a latent-variable approach with feedback and semi-Markovian components},
  journal = {Journal of Agricultural, Biological, and Environmental Statistics},
  year = {2014},
  volume = {19},
  pages = {82-100},
  doi = {https://doi.org/10.1007/s13253-013-0158-6}
}
Larsen, L.-H., Sagerup, K. and Ramsvatn, S. The mussel path – Using the contaminant tracer, Ecotracer, in Ecopath to model the spread of pollutants in an Arctic marine food web 2016 Ecological Modelling
Vol. 331, pp. 77 - 85 
article DOI URL 
BibTeX:
@article{Larsen2016,
  author = {Lars-Henrik Larsen and Kjetil Sagerup and Silje Ramsvatn},
  title = {The mussel path – Using the contaminant tracer, Ecotracer, in Ecopath to model the spread of pollutants in an Arctic marine food web},
  journal = {Ecological Modelling},
  year = {2016},
  volume = {331},
  pages = {77 - 85},
  note = {Ecopath 30 years – Modelling ecosystem dynamics: beyond boundaries with EwE},
  url = {http://www.sciencedirect.com/science/article/pii/S0304380015004895},
  doi = {https://doi.org/10.1016/j.ecolmodel.2015.10.011}
}
Lewis, K., de Mutsert, K., Steenbeek, J., Peele, H., Cowan, J. and Buszowski, J. Employing ecosystem models and geographic information systems (GIS) to investigate the response of changing marsh edge on historical biomass of estuarine nekton in Barataria Bay, Louisiana, USA 2016 Ecological Modelling
Vol. 331, pp. 129 - 141 
article DOI URL 
BibTeX:
@article{Lewis2016,
  author = {K.A. Lewis and K. de Mutsert and J. Steenbeek and H. Peele and J.H. Cowan and J. Buszowski},
  title = {Employing ecosystem models and geographic information systems (GIS) to investigate the response of changing marsh edge on historical biomass of estuarine nekton in Barataria Bay, Louisiana, USA},
  journal = {Ecological Modelling},
  year = {2016},
  volume = {331},
  pages = {129 - 141},
  note = {Ecopath 30 years – Modelling ecosystem dynamics: beyond boundaries with EwE},
  url = {http://www.sciencedirect.com/science/article/pii/S0304380016300059},
  doi = {https://doi.org/10.1016/j.ecolmodel.2016.01.017}
}
Marques, T.A., Thomas, L., Fancy, S.G. and Buckland, S.T. Improving estimates of bird density using multiple covariate distance sampling 2007 The Auk
Vol. 124, pp. 1229-1243 
article DOI  
BibTeX:
@article{Maretal07,
  author = {Marques, T. A. and L. Thomas and S. G. Fancy and S. T. Buckland},
  title = {Improving estimates of bird density using multiple covariate distance sampling},
  journal = {The Auk},
  year = {2007},
  volume = {124},
  pages = {1229--1243},
  doi = {https://doi.org/10.1642/0004-8038(2007)124%5B1229:IEOBDU%5D2.0.CO;2}
}
Marques, T.A. Distance sampling: estimating animal density 2009 Significance
Vol. 6, pp. 136-137 
article  
BibTeX:
@article{Marques2009h,
  author = {Tiago A. Marques},
  title = {Distance sampling: estimating animal density},
  journal = {Significance},
  year = {2009},
  volume = {6},
  pages = {136--137}
}
de Mutsert, K., Steenbeek, J., Lewis, K., Buszowski, J., Cowan, J.H. and Christensen, V. Exploring effects of hypoxia on fish and fisheries in the northern Gulf of Mexico using a dynamic spatially explicit ecosystem model 2016 Ecological Modelling
Vol. 331, pp. 142 - 150 
article DOI URL 
BibTeX:
@article{Mutsert2016,
  author = {Kim de Mutsert and Jeroen Steenbeek and Kristy Lewis and Joe Buszowski and James H. Cowan and Villy Christensen},
  title = {Exploring effects of hypoxia on fish and fisheries in the northern Gulf of Mexico using a dynamic spatially explicit ecosystem model},
  journal = {Ecological Modelling},
  year = {2016},
  volume = {331},
  pages = {142 - 150},
  note = {Ecopath 30 years – Modelling ecosystem dynamics: beyond boundaries with EwE},
  url = {http://www.sciencedirect.com/science/article/pii/S0304380015004913},
  doi = {https://doi.org/10.1016/j.ecolmodel.2015.10.013}
}
Regehr, E.V., Wilson, R.R., Rode, K.D., Runge, M.C. and Stern, H.L. Harvesting wildlife affected by climate change: a modelling and management approach for polar bears 2017 Journal of Applied Ecology, pp. n/a-n/a  article DOI URL 
BibTeX:
@article{Regehr2017a,
  author = {Regehr, Eric V. and Wilson, Ryan R. and Rode, Karyn D. and Runge, Michael C. and Stern, Harry L.},
  title = {Harvesting wildlife affected by climate change: a modelling and management approach for polar bears},
  journal = {Journal of Applied Ecology},
  year = {2017},
  pages = {n/a--n/a},
  url = {http://dx.doi.org/10.1111/1365-2664.12864},
  doi = {https://doi.org/10.1111/1365-2664.12864}
}
Reinaldo, M.O., Milessi, A.C., Romero, M.A., Crespo, E., Wolff, M. and González, R.A. Assessing the effects of demersal fishing and conservation strategies of marine mammals over a Patagonian food web 2016 Ecological Modelling
Vol. 331, pp. 31 - 43 
article DOI URL 
BibTeX:
@article{Reinaldo2016,
  author = {Matías Ocampo Reinaldo and Andrés C. Milessi and María Alejandra Romero and Enrique Crespo and Matthias Wolff and Raúl A. González},
  title = {Assessing the effects of demersal fishing and conservation strategies of marine mammals over a Patagonian food web},
  journal = {Ecological Modelling},
  year = {2016},
  volume = {331},
  pages = {31 - 43},
  note = {Ecopath 30 years – Modelling ecosystem dynamics: beyond boundaries with EwE},
  url = {http://www.sciencedirect.com/science/article/pii/S0304380015005104},
  doi = {https://doi.org/10.1016/j.ecolmodel.2015.10.025}
}
Ruzicka, J.J., Brink, K.H., Gifford, D.J. and Bahr, F. A physically coupled end-to-end model platform for coastal ecosystems: Simulating the effects of climate change and changing upwelling characteristics on the Northern California Current ecosystem 2016 Ecological Modelling
Vol. 331, pp. 86 - 99 
article DOI URL 
BibTeX:
@article{Ruzicka2016,
  author = {James J. Ruzicka and Kenneth H. Brink and Dian J. Gifford and Frank Bahr},
  title = {A physically coupled end-to-end model platform for coastal ecosystems: Simulating the effects of climate change and changing upwelling characteristics on the Northern California Current ecosystem},
  journal = {Ecological Modelling},
  year = {2016},
  volume = {331},
  pages = {86 - 99},
  note = {Ecopath 30 years – Modelling ecosystem dynamics: beyond boundaries with EwE},
  url = {http://www.sciencedirect.com/science/article/pii/S0304380016300060},
  doi = {https://doi.org/10.1016/j.ecolmodel.2016.01.018}
}
Stäbler, M., Kempf, A., Mackinson, S., Poos, J.J., Garcia, C. and Temming, A. Combining efforts to make maximum sustainable yields and good environmental status match in a food-web model of the southern North Sea 2016 Ecological Modelling
Vol. 331, pp. 17 - 30 
article DOI URL 
BibTeX:
@article{Staebler2016,
  author = {Moritz Stäbler and Alexander Kempf and Steven Mackinson and Jan Jaap Poos and Clement Garcia and Axel Temming},
  title = {Combining efforts to make maximum sustainable yields and good environmental status match in a food-web model of the southern North Sea},
  journal = {Ecological Modelling},
  year = {2016},
  volume = {331},
  pages = {17 - 30},
  note = {Ecopath 30 years – Modelling ecosystem dynamics: beyond boundaries with EwE},
  url = {http://www.sciencedirect.com/science/article/pii/S0304380016300084},
  doi = {https://doi.org/10.1016/j.ecolmodel.2016.01.020}
}
Stanton-Geddes, J., de Freitas, C.G. and de Sales Dambros, C. In defense of P values: comment on the statistical methods actually used by ecologists 2014 Ecology
Vol. 95(3)Ecology, pp. 637-642 
article DOI URL 
BibTeX:
@article{Stanton-Geddes2014,
  author = {Stanton-Geddes, John and de Freitas, Cintia Gomes and de Sales Dambros, Cristian},
  title = {In defense of P values: comment on the statistical methods actually used by ecologists},
  booktitle = {Ecology},
  journal = {Ecology},
  publisher = {Ecological Society of America},
  year = {2014},
  volume = {95},
  number = {3},
  pages = {637--642},
  url = {http://dx.doi.org/10.1890/13-1156.1},
  doi = {https://doi.org/10.1890/13-1156.1}
}
Villasante, S., Arreguín-Sánchez, F., Heymans, J., Libralato, S., Piroddi, C., Christensen, V. and Coll, M. Modelling marine ecosystems using the Ecopath with Ecosim food web approach: New insights to address complex dynamics after 30 years of developments 2016 Ecological Modelling
Vol. 331, pp. 1 - 4 
article DOI URL 
BibTeX:
@article{Villasante2016,
  author = {S. Villasante and F. Arreguín-Sánchez and J.J. Heymans and S. Libralato and C. Piroddi and V. Christensen and M. Coll},
  title = {Modelling marine ecosystems using the Ecopath with Ecosim food web approach: New insights to address complex dynamics after 30 years of developments},
  journal = {Ecological Modelling},
  year = {2016},
  volume = {331},
  pages = {1 - 4},
  note = {Ecopath 30 years – Modelling ecosystem dynamics: beyond boundaries with EwE},
  url = {http://www.sciencedirect.com/science/article/pii/S0304380016301430},
  doi = {https://doi.org/10.1016/j.ecolmodel.2016.04.017}
}
Warton, D.I., Lyons, M., Stoklosa, J. and Ives, A.R. Three points to consider when choosing a LM or GLM test for count data 2016 Methods in Ecology and Evolution
Vol. 7(8), pp. 882-890 
article DOI  
BibTeX:
@article{Warton2016,
  author = {David I. Warton and Mitchell Lyons and Jakub Stoklosa and Anthony R. Ives},
  title = {Three points to consider when choosing a LM or GLM test for count data},
  journal = {Methods in Ecology and Evolution},
  publisher = {Wiley},
  year = {2016},
  volume = {7},
  number = {8},
  pages = {882--890},
  doi = {https://doi.org/10.1111/2041-210x.12552}
}
Wild, C.J., Pfannkuch, M., Regan, M. and Horton, N.J. Towards more accessible conceptions of statistical inference 2011 Journal of the Royal Statistical Society. Series A
Vol. 174, pp. 1-23 
article  
BibTeX:
@article{Wild2011,
  author = {C. J. Wild and M. Pfannkuch and M. Regan and N. J. Horton},
  title = {Towards more accessible conceptions of statistical inference},
  journal = {Journal of the Royal Statistical Society. Series A},
  year = {2011},
  volume = {174},
  pages = {1--23}
}
Zuur, A.F., Ieno, E.N. and Elphick, C.S. A protocol for data exploration to avoid common statistical problems 2009 Methods in Ecology & Evolution
Vol. 1, pp. 3-14 
article DOI  
BibTeX:
@article{Zuur2009,
  author = {Alain F. Zuur and Elena N. Ieno and Chris S. Elphick},
  title = {A protocol for data exploration to avoid common statistical problems},
  journal = {Methods in Ecology & Evolution},
  year = {2009},
  volume = {1},
  pages = {3-14},
  doi = {https://doi.org/10.1111/j.2041-210X.2009.00001.x}
}
Zuur, A.F. and Ieno, E.N. A protocol for conducting and presenting results of regression-type analyses 2016 Methods in Ecology and Evolution
Vol. 7(6), pp. 636-645 
article DOI URL 
BibTeX:
@article{Zuur2016,
  author = {Zuur, Alain F. and Ieno, Elena N.},
  title = {A protocol for conducting and presenting results of regression-type analyses},
  journal = {Methods in Ecology and Evolution},
  year = {2016},
  volume = {7},
  number = {6},
  pages = {636--645},
  url = {http://dx.doi.org/10.1111/2041-210X.12577},
  doi = {https://doi.org/10.1111/2041-210X.12577}
}