Sumários
SNP calling and filtering
9 Abril 2026, 09:00 • Bruno Miguel Santos de Almeida Nevado
Understand how to infer (diploid) genotypes from mapped data.
Perform threshold-based SNP filtering.
Estimate nucleotide diversity along the genome using VCF files.
SNP calling
26 Março 2026, 09:30 • Bruno Miguel Santos de Almeida Nevado
BAM, VCF and GFF file formats.
SNP calling from short reads.
SNP calling
26 Março 2026, 09:00 • Bruno Miguel Santos de Almeida Nevado
BAM, VCF and GFF file formats.
SNP calling from short reads.
Mapping short reads to reference genome
19 Março 2026, 09:30 • Bruno Miguel Santos de Almeida Nevado
The re-sequencing process.
How to evaluate the quality of a genome assembly.
Mapping trimmed sequencing reads to reference genome.
Evaluate quality of mapping.
Mapping short reads to reference genome
19 Março 2026, 09:00 • Bruno Miguel Santos de Almeida Nevado
The re-sequencing process.
How to evaluate the quality of a genome assembly.
Mapping trimmed sequencing reads to reference genome.
Evaluate quality of mapping.