Sumários
Proteomics and metabolomics
20 Outubro 2021, 15:00 • Margarida Henriques da Gama Carvalho
Introduction to proteomics and metabolomics approaches.
Specific and shared principles for the analysis of proteomics and metabolomics data.
Omics databases and DE expression analysis
20 Outubro 2021, 13:30 • Margarida Henriques da Gama Carvalho
Databases and resources for proteomics and metabolomics.
From data table to differential expression in R
Defining an omics research/analysis project.
NGS data analysis workflows
13 Outubro 2021, 15:00 • Margarida Henriques da Gama Carvalho
Analyzing NGS datasets - work methodologies.
Introduction to genomic data visualization, manipulation and analysis using Galaxy.
Applications to Biomedicine.
NGS data analysis workflows
13 Outubro 2021, 13:30 • Margarida Henriques da Gama Carvalho
- Understand the global workflow for the analysis of NGS data;
- Understand the standard quality control steps performed on the raw data using FastQC;
- Become acquainted with the Galaxy platform;
- Be able to perform a basic analysis of NGS data on this platform - from QC to genome alignment.
Massive Parallel Sequencing for Genomics and Transcriptomics
6 Outubro 2021, 15:00 • Margarida Henriques da Gama Carvalho
Evolution of DNA sequencing technologies: from Sanger to Massive Parallel Sequencing.
The pioneers: Polony and Pyrosquencing 454.
Illumina sequencing.
The concept of sequencing depth.
The 4th generation: Nanopore sequencing.
The .fastq data format