Sumários

T6

23 Outubro 2023, 16:00 • Ana Filipa Ferreira do Vale

Comparative genomics. Multiple sequence alignment (MSA), synteny maps, sequence logos.

Project support regarding sequence collection and MSA. Paper discussion on the importance of comparative genomics in the study of COVID-19.

TP5

18 Outubro 2023, 09:30 • Ana Filipa Ferreira do Vale

de novo genome assembly with SPAdes and genome assembly quality assessment.

Description of the project to be carried out in a group by the students.

T5

16 Outubro 2023, 16:00 • Ana Filipa Ferreira do Vale

Topics in Comparative Genomics and Sequence Analysis. Understanding Local and Global Alignments. Scoring Matrices for Sequence Comparison. DotPlots. BLAST (Basic Local Alignment Search Tool).

TP4

11 Outubro 2023, 09:30 • Ana Filipa Ferreira do Vale

Assessing and improving the quality of raw data from next generation sequencing.

T4

9 Outubro 2023, 16:00 • Ana Filipa Ferreira do Vale

Genome annotation. Ab initio and extrinsic gene prediction. Pipelines for genome annotation. Databases for deposit of sequence data. Paper discussion.