Sumários

Read mapping and QC

20 Março 2025, 09:30 • Bruno Miguel Santos de Almeida Nevado

Reference genome preparation, read mapping, and QC of mapped reads.

sam/bam format and read mapping and QC

20 Março 2025, 09:00 • Bruno Miguel Santos de Almeida Nevado

The SAM/BAM format for mapped reads.


genome assembly stats

13 Março 2025, 09:30 • Bruno Miguel Santos de Almeida Nevado

Conclusion of trimming and QC exercises.

Concepts of contig, scaffold, chromosome.
Assessment of genome assembly quality: length, N50, N90, L50.
Beginning of data selection for group projects.

genome assembly stats

13 Março 2025, 09:00 • Bruno Miguel Santos de Almeida Nevado

Conclusion of trimming and QC exercises.

Concepts of contig, scaffold, chromosome.
Assessment of genome assembly quality: length, N50, N90, L50.
Beginning of data selection for group projects.

Fastq e trimming

6 Março 2025, 09:30 • Bruno Miguel Santos de Almeida Nevado

Obtaining raw sequence data from different sources. 

Trimming of Illumina reads.