Sumários

7. Microarrays

11 Abril 2019, 15:30 João Ferreira

Explore the database ArrayExpress and information retrieval for a study on Alzheimer's disease.


Microarrays

10 Abril 2019, 15:30 Catia Luisa Santana Calisto Pesquita


Explore the database ArrayExpress and information retrieval for a study on
Alzheimer's disease. 


Gene Expression.

10 Abril 2019, 13:30 Catia Luisa Santana Calisto Pesquita


Mining Microarrays Gene Expression Data. Gene Expression Data. Transcriptome and Transcriptomics. Microarrays. Principles. Data normalization. Microarray repositories. Mining microarray data.Parametric statistical methods, Clustering and Classification approaches. Usage of GO in Gene Expression. Term-ofr term analysis. RNA-seq data analysis. Purpose and goals. RNa-Seq vs Microarrays. RNA sequencers. RNA seq analysis principles. the FASTQ format. Read quality control, Genome mapping. SAM and BAM formats. Sequence aligners: sliced and non spliced. Calculating expression levels. The RNA Seq pipeline


6. Interaction

4 Abril 2019, 15:30 João Ferreira

Explore STRING-DB for examining specific protein interaction. Explore the web resource Reactome for exploring metabolic pathways. Explore Cytoscape for navigating protein interaction networks.


Interaction

3 Abril 2019, 15:30 Catia Luisa Santana Calisto Pesquita


Explore STRING-DB for examining specific protein interaction. Explore the web resource Reactome for exploring metabolic pathways. Explore Cytoscape for navigating protein interaction networks.