Sumários
RNA-seq data analysis
9 Maio 2018, 13:30 • André Osório e Cruz de Azerêdo Falcão
RNA-seq data analysis. Purpose and goals. RNa-Seq vs Microarrays. RNA sequencers. RNA seq analysis
principles. the FASTQ format. Read quality control, Genome mapping. SAM and BAM formats. Sequence aligners:
sliced and non spliced. Calculating expression levels. The RNA Seq pipeline
Microarray data analysis.
3 Maio 2018, 16:00 • André Osório e Cruz de Azerêdo Falcão
Exploring the database ArrayExpress and information retrieval for a study on Alzheimer's disease
Protein interactions and methabolic pathways
2 Maio 2018, 15:30 • André Osório e Cruz de Azerêdo Falcão
Explore STRING-DB for examining specific protein interaction. Explore the web resource Reactome for exploring metabolic pathways. Explore Cytoscape for navigating protein interaction networks
Mining Microarrays Gene Expression Data
2 Maio 2018, 13:30 • André Osório e Cruz de Azerêdo Falcão
Mining Microarrays Gene Expression Data. What is Gene Expression Data. Transcriptome and Transcriptomics.
Microarrays. Principles. Data normalization. Microarray repositories. Mining microarray data.Parametric
statistical methods, Clustering and Classification approaches. Usage of GO in Gene Expression. Term-ofr
term analysis. Term enrichment
Protein interactions and methabolic pathways
26 Abril 2018, 16:00 • André Osório e Cruz de Azerêdo Falcão
Explore STRING-DB for examining specific protein interaction. Explore the web resource Reactome for exploring metabolic pathways. Explore Cytoscape for navigating protein interaction networks