Sumários
Local BLAST alignment and database searching
21 Março 2018, 15:30 • André Osório e Cruz de Azerêdo Falcão
Local BLAST alignment and database searching. Multiple sequence alignment. Use R for interfacing with blastp
Hidden Markov Models for identification of protein families. Protein Secondary Structure prediction
21 Março 2018, 13:30 • André Osório e Cruz de Azerêdo Falcão
Hidden Markov Models for identification of protein families and Secondary Structure prediction. Concepts
of hidden markov models. The standard architecture for biological sequences. The viterbi algorithm. Protein
secondary structure prediction, Goals and Methods:Amino acids propensities,Known structural information,
Automated methods. Online models. Neural networks for classification. Examples
Online tools for sequence alignment.
15 Março 2018, 16:00 • André Osório e Cruz de Azerêdo Falcão
Online tools for sequence alignment. Making alignments with local databases. Run BLASTP and BLASTN Online (NCBI and UniProt).
Online tools for sequence alignment.
14 Março 2018, 15:30 • André Osório e Cruz de Azerêdo Falcão
Online tools for sequence alignment. Making alignments with local databases. Run BLASTP and BLASTN Online (NCBI and UniProt).
Beyond Single Sequence Alignment.
14 Março 2018, 13:30 • André Osório e Cruz de Azerêdo Falcão
Beyond Single Sequence Alignment. Multiple alignments: Principles,Visualizing and interpreting multiple
alignments. Examples. Annotation of biological sequences. Identification of conserved domainsDomains for remote homologies. Motifs and domains