Sumários

Model Implementation Support and Results Presentation

20 Maio 2026, 13:30 Rafael Neto Henriques

This session continued to provide hands-on support for students regarding the practical implementation of their selected physiological models, assisting groups in resolving ongoing programming challenges and refining their code. As most of the students already transitioned from computation to analysis, the focus of the class also expanded toward the project's reporting phase. Targeted guidance on how to effectively structure the final report and accurately visualize simulation results was given, ensuring that students can clearly articulate the mathematical outcomes and physiological significance of their findings before their final submission.


Parameter Estimation - Weighted and Non-Linear Regression and A Posteriori Identification

20 Maio 2026, 10:00 Rafael Neto Henriques

Continuing the discussion on parameter estimation, this theoretical class transitioned from simple linear least squares regression to more advanced data fitting techniques by first addressing the inherent pitfalls of the standard linear approach. The session highlighted the diagnostic value of analyzing residual plots to identify models that fail to appropriately capture the underlying system dynamics or measured data. To address the common violation of constant noise variance across measurements, the class introduced weighted linear least squares regression, demonstrating its utility through a practical example involving log-transformed data. 


The focus then shifted to the general mathematical principles of non-linear least squares fitting. While acknowledging that this is fundamentally a numerical optimization problem with various algorithmic solutions, the session focused specifically on the Gauss-Newton algorithm. Exploring the mechanics of this algorithm facilitated a critical discussion on the potential vulnerabilities of non-linear parameter estimation, most notably the risk of algorithms converging to local minima rather than the true global optimum.

In the final segment of the class, these parameter estimation techniques were integrated into the broader context of a posteriori identification. The session concluded by introducing parameter sensitivity analysis, explaining how to use regression techniques to evaluate the reliability and precision of estimated parameters based on the experimental data.


Model Implementation Support and Results Presentation

20 Maio 2026, 08:30 Rafael Neto Henriques

This session continued to provide hands-on support for students regarding the practical implementation of their selected physiological models, assisting groups in resolving ongoing programming challenges and refining their code. As most of the students already transitioned from computation to analysis, the focus of the class also expanded toward the project's reporting phase. Targeted guidance on how to effectively structure the final report and accurately visualize simulation results was given, ensuring that students can clearly articulate the mathematical outcomes and physiological significance of their findings before their final submission.


Model Identification – A Priori Identifiability (Part 2) and Parameter Estimation (LLS regression)

19 Maio 2026, 11:00 Rafael Neto Henriques

Continuing the exploration of a priori model identification, this theoretical class deepened the topic by analyzing compartmental models that are either nonuniquely identifiable or strictly unidentifiable. Building on the Laplace transform methodology introduced previously, the class demonstrated how computing the transfer function can reveal critical mathematical gaps, providing the necessary insights to design new experimental strategies (such as altering test signals or measurement sites) to make these models identifiable.


Moving beyond linear systems with simple single-input/single-output structures, the session introduced a generalized framework for a priori identification compatible with both linear and non-linear models. Central to this approach was the introduction of the exhaustive summary concept. To illustrate its application, this framework was applied to Bolie's model for the glucose-insulin system. This example demonstrated how utilizing multiple input and output measurements can yield additional observational parameters within the exhaustive summary, successfully resolving identifiability challenges. 

In the final segment of the class, the focus shifted from theoretical identifiability to the practical Parameter Estimation problem. The session introduced linear least squares regression, explaining its application for estimating parameters in strictly linear functions, as well as in non-linear functions that can be mathematically linearized through transformations (e.g., the Michaelis-Menten enzyme kinetics model).


Project discussion.

19 Maio 2026, 08:30 Alexandre da Rocha Freire de Andrade

Project discussion.